S. Kim^, Y. Bai, Z. Fan, B. Diergaarde, G. C. Tseng, H-J. Park*, The microRNA target site landscape is a novel molecular feature associating alternative polyadenylation with immune evasion activity in breast cancer. Briefings in Bioinformatics (2020), bbaa191
H-J. Parkˆ, P. Jiˆ, S. Kim, Z. Xia, B. Rodriguez, C-P. Masamha, A-B, Shyu, J. Neilson, E.J. Wagner*, W. Li*, “3′ UTR shortening Down-regulates Tumor Suppressors in trans by Disrupting the CeRNA Crosstalk." Nature Genetics, 50, 783-789 (2018). DOI:10.1038
H. J. Park^*, S. Kim, W. Li*, “Model-based analysis of competing-endogenous pathways
(MACPath) in human cancers”, PLoS Computational Biology, 14(3): e1006074. DOI:10.1371.
M. Jeong^, H. J. Park^, H. Celik, E. L. Ostrander, J. M. Reyes, A. Guzman, B. Rodriguez, Y. Lee, L. Ding, O. A. Guryanova, W. Li, M. A. Goodell*, G. A. Challen*, “Loss of Dnmt3a Immortalizes Hematopoietic Stem Cells in vivo”, Cell Reports, in press.
L. Minˆ, M. Jeongˆ, D. Sunˆ, H-J. Parkˆ, B. Rodriguezˆ, Z. Xia, L. Yang, X. Zhang, GJ. Darlington, W. Li* and M.A. Goodell*, “Long Non-coding RNAs Control Hematopoietic Stem Cell (HSC) Function." Cell Stem Cell, 16(4):426-38, 2015. DOI:10.1016/j.stem.2015.02.002
L. Wangˆ, H-J. Parkˆ, S. Wang, J-P Kocher, W. Li*, “CPAT: Coding-Potential Assessment Tool Using an Alignment-Free Logistic Regression Model." Nucleic Acid Research 41(6), 2013, DOI:10.1093/nar/gkt006
H-J. Parkˆ and L. Nakhleh*, “Inference of Reticulate Evolutionary Histories by Maximum Likelihood: The Performance of Information Criteria." BMC Bioinformatics, 13: S12, 2012. bmcbioinformatics.biomedcentral.com/articles